The "server is experienceing temporary difficulties" always exists currently. This is due to the auto update functionality not working correctly. This does not impact your ability to participate in the Ecosystem. You should still recieve and send organisms. You see this message when your Ecosystem is empty. Once organisms start to show up, you won't see this message any more.
So if you leave a client running, you have a positive peer count (as dkocur replied, he sees 40+), then the server is up and running. If after some time you are not receiving any teleports, then something else is wrong, most likely you are behind a firewall.
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