Hi, Computer Freek,
Based on my understanding, you want to keep the mdf file when you reinstall your application, don't you?
Well, to do this job, you should add the application files separately through "Add"->"File..."

Then you can set the "Permanent" property of this mdf file to true.

After that, when you uninstall your application, the mdf will not be removed and when you reinstall the application, the mdf will not be over written as well.
Hope this helps,
Regards