You can use ClickOnce to install it, but know that you have to track down the exe file, which changes if you ever reinstall it or push an upgrade and then go run the app using the shortcut.
What might be better for you is to XCopy the files in your bin folder and put them in a folder on your server, and just run the console application the way you are. Since you don't really care about the ClickOnce-ness of it all, you don't have to use it in order to make the application work.
RobinDotNet
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